# ACUITY Training Documentation

## ACUITY Training Documentation

- [Introduction](https://decmt.gitbook.io/acuity-training-documentation/acuity/introduction.md): Welcome to the training material to support ACUITY.
- [Background](https://decmt.gitbook.io/acuity-training-documentation/acuity/background.md): The visual analytics component of ACUITY was previously communicated as REACT – REal time Analytics for Clinical Trials, as of February 2022 the Open source version is referred to as ACUITY.
- [System Components](https://decmt.gitbook.io/acuity-training-documentation/acuity/system-components.md): ACUITY visual analytics component consists of 3 web applications: VA Hub, ADMIN UI and VA Security
- [Why is it useful?](https://decmt.gitbook.io/acuity-training-documentation/acuity/why-is-it-useful.md): ACUITYs intended use
- [Where can you use it?](https://decmt.gitbook.io/acuity-training-documentation/acuity/where-can-you-use-it.md): How ACUITY can support your organisation
- [User group](https://decmt.gitbook.io/acuity-training-documentation/acuity/user-group.md): Potential user groups for ACUITY
- [VA Security Overview](https://decmt.gitbook.io/acuity-training-documentation/granting-access/va-security-overview.md): This overview will provide an understanding to the VA security component of REACT and how to manage user access to data within REACT.
- [User access](https://decmt.gitbook.io/acuity-training-documentation/granting-access/user-access.md): A user needs to be granted access to REACT before they can access any studies within the system.  The access granted will be dependent upon the role the user will have within the system.
- [Adding new users](https://decmt.gitbook.io/acuity-training-documentation/granting-access/user-access/adding-new-users.md): In order to use REACT a user needs to be added to REACT and assigned an appropriate role to allow them to perform the relevant activities within the system.
- [User roles and access](https://decmt.gitbook.io/acuity-training-documentation/granting-access/user-access/user-roles-and-access.md): When a user is added the access permissions to the different REACT applications is dependent upon the role they have within the system.
- [Granting access to drug programmes and datasets](https://decmt.gitbook.io/acuity-training-documentation/granting-access/user-access/granting-access-to-drug-programmes-and-datasets.md): Once a user has been added to REACT, although they have access to the applications relevant to the role, they will need access to relevant studies.
- [Controlling views in VA HUB](https://decmt.gitbook.io/acuity-training-documentation/granting-access/user-access/controlling-views-in-va-hub.md): When a user is granted access permissions to a drug programme or dataset within REACT, they are granted access to a REACT Package.
- [Views available for REACT Packages](https://decmt.gitbook.io/acuity-training-documentation/granting-access/user-access/controlling-views-in-va-hub/views-available-for-react-packages.md): The table below describes the range of data types or graphs that can be selected for each package, Base and Oncology, this is dependent on the study data that is being collected and loaded into REACT.
- [Data Loading Overview](https://decmt.gitbook.io/acuity-training-documentation/data-loading/data-loading-overview.md): This section will introduce you to the data loading component in REACT, ADMIN UI and contains a general overview of what’s required to get data loaded into REACT.
- [ADMIN UI overview](https://decmt.gitbook.io/acuity-training-documentation/data-loading/data-loading-overview/admin-ui-overview.md): This overview gives you an introduction to the data loading component of REACT, ADMIN UI and the overarching process involved in getting data into REACT to help get started.
- [ADMIN UI user guide](https://decmt.gitbook.io/acuity-training-documentation/data-loading/data-loading-overview/admin-ui-overview/admin-ui-user-guide.md): This guide provides detailed information on the functionality of ADMIN UI, to support the data loading training material.
- [General overview](https://decmt.gitbook.io/acuity-training-documentation/data-loading/data-loading-overview/general-overview.md): This general overview introduces the requirements and steps involved in loading specific datasets to ADMIN UI.
- [Creating a study](https://decmt.gitbook.io/acuity-training-documentation/creating-a-study.md): Prior to loading data into ADMIN UI a drug programme and dataset within the drug programme you want to load data needs to be created.
- [Configuring a drug programme](https://decmt.gitbook.io/acuity-training-documentation/creating-a-study/configuring-a-drug-programme.md): To enter study data into REACT the study must first be set up in the ADMIN UI component of REACT.
- [Configuring a dataset](https://decmt.gitbook.io/acuity-training-documentation/creating-a-study/configuring-a-dataset.md): Once a drug programme has been set up in ADMIN UI then datasets can be added to the drug programme.
- [Creating a dataset](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset.md): This section details the steps required to create a dataset for a study in REACT.
- [Mapping mandatory data files](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset/mapping-mandatory-data-files.md): There are 3 mandatory data files, demography, visit and dose which must be mapped and loaded into ADMIN UI for any dataset, as the minimum requirement to visualise data in VA HUB.
- [Loading mandatory data files](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset/loading-mandatory-data-files.md): Mapped data files are loaded into ADMIN UI in the 'review data set up' section of the clinical study set up menu.
- [Reviewing data load success in ADMIN UI](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset/reviewing-data-load-success-in-admin-ui.md): Checking data has loaded correctly and troubleshooting any errors is important to ensure any hypothesis generation based on the data being visualised is correct.
- [Checking mandatory data load](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset/reviewing-data-load-success-in-admin-ui/checking-mandatory-data-load.md): Once data has been loaded into ADMIN UI, the next step is to check the status of the load to establish if any errors have occurred during the loading process.
- [Access to data load report](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset/reviewing-data-load-success-in-admin-ui/access-to-data-load-report.md): The data load status can be checked on the data load report.
- [Data load statuses](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset/reviewing-data-load-success-in-admin-ui/data-load-statuses.md): The data load report provides details on the status of your load.  A data load summary section is shown at the top of the page with information on the last 3 uploads.
- [Data load error classifications](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset/reviewing-data-load-success-in-admin-ui/data-load-error-classifications.md): The errors detailed on the data load report can be classified to help target the area to troubleshoot.
- [Data load reports](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset/reviewing-data-load-success-in-admin-ui/data-load-reports.md): Accessing the data load report presents information on the last 3 loads.  Making a load selection from the list presents the different reports available for the selected data load.
- [Reviewing data quality in VA HUB](https://decmt.gitbook.io/acuity-training-documentation/creating-a-dataset/reviewing-data-quality-in-va-hub.md): When any data type has been mapped and loaded into ADMIN UI it is advised to check the visualisation is presented correctly in VA HUB to ensure quality of data is as expected.
- [Data Loading Exercise](https://decmt.gitbook.io/acuity-training-documentation/data-loading-exercise.md): With the information below and example files provided create a study within REACT and load the 3 mandatory data files into it.
- [Adverse Events](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events.md): This section will describe how to map, load and check Adverse Events data in REACT, ADMIN UI.
- [Adverse Events data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events/adverse-events-data.md): This page describes what data you visualise in VA HUB and why.
- [Mandatory data mappings](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events/mandatory-data-mappings.md): This page details some key things to note when mapping mandatory Adverse Events data and an example video.
- [Mandatory data load](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events/mandatory-data-load.md): The principles for loading data are as described in the Data Loading section of this training material.
- [Reviewing mandatory data load in ADMIN UI](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events/reviewing-mandatory-data-load-in-admin-ui.md): The principles of reviewing the data for loading success in ADMIN UI are as described in the Data Loading section of this training material.
- [Reviewing mandatory data quality in VA HUB](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events/reviewing-mandatory-data-quality-in-va-hub.md): The principles of reviewing the data for success in VA HUB are as described in the Data Loading section of this training material.
- [Non-mandatory data mappings](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events/non-mandatory-data-mappings.md): Non-mandatory fields can also be mapped into ADMIN UI to build out the visualisations in the Adverse Events view.
- [Non-mandatory data load & reviewing load success in ADMIN UI](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events/non-mandatory-data-load-and-reviewing-load-success-in-admin-ui.md): The principles for loading and reviewing data in ADMIN UI are as described in the Data Loading section of this training material.
- [Reviewing non-mandatory data quality in VA HUB](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events/reviewing-non-mandatory-data-quality-in-va-hub.md): The principles of reviewing the data for success in VA HUB are as described in the Data Loading section of this training material.
- [Adverse events loading exercise](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/adverse-events/adverse-events-loading-exercise.md): With the information below and example file provided map the adverse events file into ADMIN UI to the drug programme and dataset created in the Data Loading Exercise.
- [Labs](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/labs.md): This section will describe how to map, load and check Labs data in REACT, ADMIN UI.
- [Labs data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/labs/labs-data.md): This page describes what data you visualise in VA HUB and describes some key things to note when mapping Labs data.
- [Mapping Labs data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/labs/mapping-labs-data.md): This page will show you how to map Labs data.
- [Loading Labs data and reviewing success in ADMIN UI](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/labs/loading-labs-data-and-reviewing-success-in-admin-ui.md): The principles for loading and reviewing data in ADMIN UI are as described in the Data Loading section of this training material.
- [Reviewing Labs data quality in VA HUB](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/labs/reviewing-labs-data-quality-in-va-hub.md): The principles of reviewing the data for success in VA HUB are as described in the Data Loading section of this training material.
- [Labs loading exercise](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/labs/labs-loading-exercise.md): With the information below and example file provided map the Labs file into ADMIN UI to the drug programme and dataset created in the Data Loading Exercise.
- [Dosing & Exposure (PK)](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/dosing-and-exposure-pk.md): This section will describe how to map, load and check Dosing and Exposure (PK) data in REACT, ADMIN UI.
- [PK data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/dosing-and-exposure-pk/pk-data.md): This page describes what data you visualise in VA HUB and describes some key things to note when mapping dosing and exposure (PK) data for visualisation of the three different plots.
- [PK concentration data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/dosing-and-exposure-pk/pk-concentration-data.md): This page describes the PK concentration data mapping, loading, and reviewing data with key points, in addition to what data you visualise in VA HUB.
- [Specimen collection data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/dosing-and-exposure-pk/specimen-collection-data.md): This page describes the Specimen Collection data mapping, loading, and reviewing data with key points, in addition to what data you visualise in VA HUB.
- [Stacked PK results data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/dosing-and-exposure-pk/stacked-pk-results-data.md): This page describes the Stacked PK Results data mapping, loading, and reviewing data with key points, in addition to what data you visualise in VA HUB.
- [Reviewing PK data quality in VA HUB](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/dosing-and-exposure-pk/reviewing-pk-data-quality-in-va-hub.md): The principles of reviewing the data for success in VA HUB are as described in the Data Loading section of this training material.
- [Dosing & Exposure (PK) loading exercise](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/dosing-and-exposure-pk/dosing-and-exposure-pk-loading-exercise.md): With the information below and example files provided map the PK files into ADMIN UI to the drug programme and dataset created in the Data Loading Exercise.
- [Tumour Response (RECIST)](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist.md): This section will describe how to map, load and check Tumour Response (RECIST) data in REACT, ADMIN UI.
- [Tumour response data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist/tumour-response-data.md): This page describes what data you visualise in VA HUB and describes some key things to note when mapping tumour response data for visualisation of the three different plots.
- [Recist target lesion assessments (recist1) data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist/recist-target-lesion-assessments-recist1-data.md): This page describes the Recist target lesion assessments (recist1) data mapping, with key points, in addition to what data you visualise in VA HUB.
- [Recist non-target lesion assessments (recist1) data](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist/recist-non-target-lesion-assessments-recist1-data.md): This page describes the Recist non-target lesion assessments (recist1) data mapping, with key points, in addition to what data you visualise in VA HUB.
- [Recist assessment summarised (recist2)](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist/recist-assessment-summarised-recist2.md): This page describes the Recist assessment summarised (recist2) data mapping, with key points, in addition to what data you visualise in VA HUB.
- [Recist data loading and review in ADMIN UI](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist/recist-data-loading-and-review-in-admin-ui.md): This section will describe loading the different recist data files.  The principles for loading data are as described in the Data Loading section of this training material.
- [Recist 1 & 2 data mapping, loading and reviewing](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist/recist-1-and-2-data-mapping-loading-and-reviewing.md): The training video will demonstrate mapping and loading recist data.
- [Reviewing tumour response (RECIST) data quality in VA HUB](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist/reviewing-tumour-response-recist-data-quality-in-va-hub.md): The principles of reviewing the data for success in VA HUB are as described in the Data Loading section of this training material.
- [Tumour Response (RECIST) loading exercise](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist/tumour-response-recist-loading-exercise.md): Data loading exercises for loading tumour response (RECIST) data.
- [Recist 1 and Recist 2 loading exercise](https://decmt.gitbook.io/acuity-training-documentation/loading-specific-data-types/tumour-response-recist/tumour-response-recist-loading-exercise/recist-1-and-recist-2-loading-exercise.md): With the information below and example files provided map the recist files into ADMIN UI to the drug programme and dataset created in the Data Loading Exercise.